5I96 Oxidoreductase Oxidoreductase Inhibitor date Feb 19, 2016
title Crystal Structure Of Human Mitochondrial Isocitrate Dehydrog (Idh2) R140q Mutant Homodimer In Complex With Ag-221 (Enasi Inhibitor.
authors W.Wei, B.Zhang, L.Jin, F.Jiang, B.Delabarre, J.A.Travins, A.K.Pady
compound source
Molecule: Isocitrate Dehydrogenase [Nadp], Mitochondrial
Chain: A, B
Synonym: Idh,Icd-M,Idp,Nadp(+)-Specific Icdh,Oxalosuccinate Decarboxylase;
Ec: 1.1.1.42
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Idh2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Pfastbac1
symmetry Space Group: P 21 21 21
R_factor 0.163 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.368 120.348 124.734 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand 69Q, ACT, CA, GOL, NA, NDP enzyme Oxidoreductase E.C.1.1.1.42 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAG-221, a First-in-Class Therapy Targeting Acute Myeloid Leukemia Harboring Oncogenic IDH2 Mutations., Yen K, Travins J, Wang F, David MD, Artin E, Straley K, Padyana A, Gross S, DeLaBarre B, Tobin E, Chen Y, Nagaraja R, Choe S, Jin L, Konteatis Z, Cianchetta G, Saunders JO, Salituro FG, Quivoron C, Opolon P, Bawa O, Saada V, Paci A, Broutin S, Bernard OA, de Botton S, Marteyn BS, Pilichowska M, Xu Y, Fang C, Jiang F, Wei W, Jin S, Silverman L, Liu W, Yang H, Dang L, Dorsch M, Penard-Lacronique V, Biller SA, Su SM, Cancer Discov. 2017 Feb 13. pii: CD-16-1034. doi: 10.1158/2159-8290.CD-16-1034. PMID:28193778
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (314 Kb) [Save to disk]
  • Biological Unit Coordinates (5i96.pdb1.gz) 305 Kb
  • LPC: Ligand-Protein Contacts for 5I96
  • CSU: Contacts of Structural Units for 5I96
  • Structure Factors (2681 Kb)
  • Retrieve 5I96 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I96 from S2C, [Save to disk]
  • Re-refined 5i96 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I96 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5I96
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i96_B] [5i96] [5i96_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5I96
  • Community annotation for 5I96 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science