5I9J Transport Protein date Feb 20, 2016
title Structure Of The Cholesterol And Lutein-Binding Domain Of Hu At 1.74a
authors M.P.Horvath, P.S.Bernstein, B.Li, E.W.George, Q.T.Tran
compound source
Molecule: Star-Related Lipid Transfer Protein 3
Chain: A
Fragment: Lutein-Binding Domain (Unp Residues 216-444)
Synonym: Metastatic Lymph Node Gene 64 Protein,Mln 64,Prote Start Domain-Containing Protein 3,Stard3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Stard3, Cab1, Mln64
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Origami B
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b(+)
symmetry Space Group: P 31 2 1
R_factor 0.169 R_Free 0.192
length a length b length c angle alpha angle beta angle gamma
83.390 83.390 82.190 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.74 Å
ligand EDO, SO4, TLA enzyme

Primary referenceStructure of the lutein-binding domain of human StARD3 at 1.74 A resolution and model of a complex with lutein., Horvath MP, George EW, Tran QT, Baumgardner K, Zharov G, Lee S, Sharifzadeh H, Shihab S, Mattinson T, Li B, Bernstein PS, Acta Crystallogr F Struct Biol Commun. 2016 Aug;72(Pt 8):609-18. doi:, 10.1107/S2053230X16010694. Epub 2016 Jul 27. PMID:27487925
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (5i9j.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 5I9J
  • CSU: Contacts of Structural Units for 5I9J
  • Structure Factors (431 Kb)
  • Retrieve 5I9J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I9J from S2C, [Save to disk]
  • Re-refined 5i9j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I9J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5I9J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5i9j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i9j] [5i9j_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5I9J: [START ] by SMART
  • Other resources with information on 5I9J
  • Community annotation for 5I9J at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science