OCA Atlas for 5IBL

5IBL

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

NAG

enzyme

Gene
Ontology

Chain	Function	Process	Component
E, A
F, B

Primary reference

Influenza immunization elicits antibodies specific for an egg-adapted vaccine strain., Raymond DD, Stewart SM, Lee J, Ferdman J, Bajic G, Do KT, Ernandes MJ, Suphaphiphat P, Settembre EC, Dormitzer PR, Del Giudice G, Finco O, Kang TH, Ippolito GC, Georgiou G, Kepler TB, Haynes BF, Moody MA, Liao HX, Schmidt AG, Harrison SC, Nat Med. 2016 Dec;22(12):1465-1469. doi: 10.1038/nm.4223. Epub 2016 Nov 7. PMID:27820604

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (574 Kb) [Save to disk]

Biological Unit Coordinates (5ibl.pdb1.gz) 279 Kb

Biological Unit Coordinates (5ibl.pdb2.gz) 285 Kb

LPC: Ligand-Protein Contacts for 5IBL

CSU: Contacts of Structural Units for 5IBL

Structure Factors (288 Kb)

Retrieve 5IBL in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5IBL from S2C, [Save to disk]

Re-refined 5ibl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5IBL in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ibl] [5ibl_A] [5ibl_B] [5ibl_C] [5ibl_D] [5ibl_E] [5ibl_F] [5ibl_H] [5ibl_L]

SWISS-PROT database:

Domains found in 5IBL: [IG_like] [IGv ] by SMART

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