5IBX	Isomerase	date	Feb 22, 2016
title	1.65 Angstrom Crystal Structure Of Triosephosphate Isomerase From Streptococcus Pneumoniae
authors	G.Minasov, L.Shuvalova, I.Dubrovska, K.Flores, S.Shatsman, K.Kwon W.F.Anderson, Center For Structural Genomics Of Infectious D (Csgid)
compound		source
Molecule: Triosephosphate Isomerase Chain: A, B, D, E, H Synonym: Tpi,Triose-Phosphate Isomerase Ec: 5.3.1.1 Engineered: Yes		Organism_scientific: Streptococcus Pneumoniae Serotype 2 (S Nctc 7466); Organism_taxid: 373153 Strain: D39 Nctc 7466 Gene: Tpia, Spd_1404 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)-Magic Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmcsg53
Molecule: Triosephosphate Isomerase Chain: C, F, G Synonym: Tpi,Triose-Phosphate Isomerase Ec: 5.3.1.1 Engineered: Yes		Organism_scientific: Streptococcus Pneumoniae Serotype 2 (S Nctc 7466); Organism_taxid: 373153 Strain: D39 Nctc 7466 Gene: Tpia, Spd_1404 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)-Magic Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmcsg53
symmetry	Space Group: P 1	R_factor 0.196 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.845 84.351 92.463 75.43 65.97 62.03
method	X-Ray Diffraction	resolution	1.65 Å
ligand	CME, NA	enzyme	Isomerase E.C.5.3.1.1 BRENDA
Gene	SPD
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (682 Kb) [Save to disk] Biological Unit Coordinates (5ibx.pdb1.gz) 173 Kb Biological Unit Coordinates (5ibx.pdb2.gz) 171 Kb Biological Unit Coordinates (5ibx.pdb3.gz) 170 Kb Biological Unit Coordinates (5ibx.pdb4.gz) 172 Kb LPC: Ligand-Protein Contacts for 5IBX CSU: Contacts of Structural Units for 5IBX Structure Factors (4867 Kb) Retrieve 5IBX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5IBX from S2C, [Save to disk] Re-refined 5ibx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5IBX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5IBX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ibx] [5ibx_E] [5ibx_C] [5ibx_G] [5ibx_F] [5ibx_H] [5ibx_A] [5ibx_D] [5ibx_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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