5ICM Oxidoreductase date Feb 23, 2016
title 17beta-Hydroxysteroid Dehydrogenase Type 14 In Complex With Steroidal Inhibitor
authors N.Bertoletti, F.Braun, S.Marchais-Oberwinkler, A.Heine, G.Klebe
compound source
Molecule: 17-Beta-Hydroxysteroid Dehydrogenase 14
Chain: A
Synonym: 17-Beta-Hsd 14,17-Beta-Hydroxysteroid Dehydrogenas Dehydrogenasereductase Sdr Family Member 10,Retinal Short- Dehydrogenasereductase Retsdr3,Short Chain Dehydrogenaser Family 47c Member 1;
Ec: 1.1.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsd17b14, Dhrs10, Sdr3, Sdr47c1, Unq502pro474
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
symmetry Space Group: I 4 2 2
R_factor 0.159 R_Free 0.189
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.662 91.662 133.909 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.68 Å
ligand F45, GLC, NA, NAD enzyme Oxidoreductase E.C.1.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNew Insights into Human 17beta-Hydroxysteroid Dehydrogenase Type 14: First Crystal Structures in Complex with a Steroidal Ligand and with a Potent Nonsteroidal Inhibitor., Bertoletti N, Braun F, Lepage M, Moller G, Adamski J, Heine A, Klebe G, Marchais-Oberwinkler S, J Med Chem. 2016 Jul 12. PMID:27362750
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (5icm.pdb1.gz) 457 Kb
  • LPC: Ligand-Protein Contacts for 5ICM
  • CSU: Contacts of Structural Units for 5ICM
  • Structure Factors (285 Kb)
  • Retrieve 5ICM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ICM from S2C, [Save to disk]
  • Re-refined 5icm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5ICM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ICM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5icm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5icm] [5icm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ICM
  • Community annotation for 5ICM at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science