5IE2	Ligase	date	Feb 24, 2016
title	Crystal Structure Of A Plant Enzyme
authors	M.R.Fan, M.Li, W.R.Chang
compound		source
Molecule: Oxalate--Coa Ligase Chain: A, B Synonym: 4-Coumarate--Coa Ligase Isoform 8,At4cl8,4-Coumara Ligase-Like 10,Acyl-Activating Enzyme 3,Adenosine Monophosp Binding Protein 3,Atmpbp3,Oxalyl-Coa Synthetase; Ec: 6.2.1.8 Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Mouse-Ear Cress Organism_taxid: 3702 Gene: Aae3, 4cll10, Ampbp3, At3g48990, T2j13.170 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.149 R_Free 0.189
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.228 117.042 72.023 90.00 93.58 90.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	ACY, ATP, MG	enzyme	Ligase E.C.6.2.1.8 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal Structures of Arabidopsis thaliana Oxalyl-CoA Synthetase Essential for Oxalate Degradation., Fan M, Xiao Y, Li M, Chang W, Mol Plant. 2016 Sep 6;9(9):1349-52. doi: 10.1016/j.molp.2016.06.002. Epub 2016, Jun 17. PMID:27326693

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (351 Kb) [Save to disk] Biological Unit Coordinates (5ie2.pdb1.gz) 175 Kb Biological Unit Coordinates (5ie2.pdb2.gz) 174 Kb LPC: Ligand-Protein Contacts for 5IE2 CSU: Contacts of Structural Units for 5IE2 Structure Factors (1583 Kb) Retrieve 5IE2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5IE2 from S2C, [Save to disk] Re-refined 5ie2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5IE2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5IE2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1r5ie2, region E:1-81 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ie2_A] [5ie2_B] [5ie2] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5IE2

Community annotation for 5IE2 at PDBWiki (http://pdbwiki.org)

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