5IEH Immune System date Feb 25, 2016
title Structure Of Hla-B40:02 In Complex With The Phosphorylated Peptide Ref(P)Skepel
authors A.Alpizar, M.Marcilla, C.Santiago
compound source
Molecule: Hla Class I Histocompatibility Antigen, B-40 Alph
Chain: A
Synonym: Bw-60,Mhc Class I Antigen B40
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-B, Hlab
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta-Gami Plys
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-22b

Molecule: Beta-2-Microglobulin
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Plys
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-30a

Molecule: Inner Centromere Protein
Chain: C
Fragment: Unp Residues 47-55
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.161 R_Free 0.183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.044 82.249 110.084 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand EDO, SEP enzyme
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (5ieh.pdb1.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 5IEH
  • CSU: Contacts of Structural Units for 5IEH
  • Structure Factors (9708 Kb)
  • Retrieve 5IEH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IEH from S2C, [Save to disk]
  • Re-refined 5ieh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IEH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IEH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ieh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ieh] [5ieh_C] [5ieh_B] [5ieh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IEH
  • Community annotation for 5IEH at PDBWiki (http://pdbwiki.org)

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