5IFM Rna Binding Protein date Feb 26, 2016
title Human Nono (P54nrb) Homodimer
authors G.J.Knott, C.S.Bond
compound source
Molecule: Non-Pou Domain-Containing Octamer-Binding Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Fragment: Unp Residues 53-312
Synonym: Nono Protein,54 Kda Nuclear Rna- And Dna-Binding P Kda Nuclear Protein,Dna-Binding P52p100 Complex,52 Kda Sub Nmt55,P54(Nrb),P54nrb;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nono, Nrb54
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Nono
Expression_system_variant: Rosetta2(De3)
symmetry Space Group: P 1 21 1
R_factor 0.197 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.150 407.177 68.961 90.00 97.75 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand CL, GOL, K, PRO enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceA crystallographic study of human NONO (p54(nrb)): overcoming pathological problems with purification, data collection and noncrystallographic symmetry., Knott GJ, Panjikar S, Thorn A, Fox AH, Conte MR, Lee M, Bond CS, Acta Crystallogr D Struct Biol. 2016 Jun;72(Pt 6):761-9. doi:, 10.1107/S2059798316005830. Epub 2016 May 25. PMID:27303796
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1051 Kb) [Save to disk]
  • Biological Unit Coordinates (5ifm.pdb1.gz) 179 Kb
  • Biological Unit Coordinates (5ifm.pdb2.gz) 178 Kb
  • Biological Unit Coordinates (5ifm.pdb3.gz) 179 Kb
  • Biological Unit Coordinates (5ifm.pdb4.gz) 179 Kb
  • Biological Unit Coordinates (5ifm.pdb5.gz) 181 Kb
  • Biological Unit Coordinates (5ifm.pdb6.gz) 180 Kb
  • LPC: Ligand-Protein Contacts for 5IFM
  • CSU: Contacts of Structural Units for 5IFM
  • Structure Factors (7531 Kb)
  • Retrieve 5IFM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IFM from S2C, [Save to disk]
  • Re-refined 5ifm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IFM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IFM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ifm] [5ifm_K] [5ifm_H] [5ifm_I] [5ifm_G] [5ifm_J] [5ifm_D] [5ifm_B] [5ifm_F] [5ifm_E] [5ifm_C] [5ifm_L] [5ifm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5IFM: [RRM ] by SMART
  • Other resources with information on 5IFM
  • Community annotation for 5IFM at PDBWiki (http://pdbwiki.org)

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