5IJ7 Transferase Transferase Inhibitor date Mar 01, 2016
title Structure Of Hsacprc2 In Complex With A Pyridone Inhibitor
authors K.S.Gajiwala, A.Brooun, Y.L.Deng, W.Liu
compound source
Molecule: Enhancer Of Zeste Homolog 2 (Ezh2),Histone-Lysine Methyltransferase Ezh2;
Chain: A, B
Synonym: Enx-1,Enhancer Of Zeste Homolog 2,Lysine N-Methylt 6;
Ec: 2.1.1.43
Engineered: Yes
Organism_scientific: Anolis Carolinensis, Homo Sapiens
Organism_common: Green Anole, Human
Organism_taxid: 28377, 9606
Gene: Ezh2, Ezh2, Kmt6
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Polycomb Protein Eed
Chain: E, F
Synonym: Heed,Wd Protein Associating With Integrin Cytoplas 1,Wait-1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eed
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Polycomb Protein Suz12
Chain: S, T
Synonym: Chromatin Precipitated E2f Target 9 Protein,Chet 9 Joined To Jazf1 Protein,Suppressor Of Zeste 12 Protein Homo
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Suz12, Chet9, Jjaz1, Kiaa0160
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 1 21 1
R_factor 0.191 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.575 115.042 153.033 90.00 102.53 90.00
method X-Ray Diffractionresolution 2.62 Å
ligand 6BN, ZN enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


F, E


Primary referencePolycomb repressive complex 2 structure with inhibitor reveals a mechanism of activation and drug resistance., Brooun A, Gajiwala KS, Deng YL, Liu W, Bolanos B, Bingham P, He YA, Diehl W, Grable N, Kung PP, Sutton S, Maegley KA, Yu X, Stewart AE, Nat Commun. 2016 Apr 28;7:11384. doi: 10.1038/ncomms11384. PMID:27122193
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (324 Kb) [Save to disk]
  • Biological Unit Coordinates (5ij7.pdb1.gz) 160 Kb
  • Biological Unit Coordinates (5ij7.pdb2.gz) 161 Kb
  • LPC: Ligand-Protein Contacts for 5IJ7
  • CSU: Contacts of Structural Units for 5IJ7
  • Structure Factors (574 Kb)
  • Retrieve 5IJ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IJ7 from S2C, [Save to disk]
  • Re-refined 5ij7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IJ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IJ7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ij7_B] [5ij7] [5ij7_T] [5ij7_E] [5ij7_S] [5ij7_A] [5ij7_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5IJ7: [CXC] [SANT] [SET] [WD40 ] by SMART
  • Other resources with information on 5IJ7
  • Community annotation for 5IJ7 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science