5IJ9 Structural Protein date Mar 01, 2016
title Cryo Em Density Of Microtubule Assembled From Human Tubb3-D4
authors S.C.Ti, M.C.Pamula, S.C.Howes, C.Duellberg, N.I.Cade, R.E.Kleiner T.Surrey, E.Nogales, T.M.Kapoor
compound source
Molecule: Tubulin Alpha-1b Chain
Chain: A
Synonym: Alpha-Tubulin Ubiquitous,Tubulin K-Alpha-1,Tubulin Ubiquitous Chain;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tuba1b
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Tubulin Beta-3 Chain
Chain: B
Synonym: Tubulin Beta-4 Chain,Tubulin Beta-III
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tubb3, Tubb4
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.70 Å
ligand GDP, GTP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • netrin receptor binding


  • Primary referenceMutations in Human Tubulin Proximal to the Kinesin-Binding Site Alter Dynamic Instability at Microtubule Plus- and Minus-Ends., Ti SC, Pamula MC, Howes SC, Duellberg C, Cade NI, Kleiner RE, Forth S, Surrey T, Nogales E, Kapoor TM, Dev Cell. 2016 Apr 4;37(1):72-84. doi: 10.1016/j.devcel.2016.03.003. PMID:27046833
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (264 Kb) [Save to disk]
  • Biological Unit Coordinates (5ij9.pdb1.gz) 260 Kb
  • LPC: Ligand-Protein Contacts for 5IJ9
  • CSU: Contacts of Structural Units for 5IJ9
  • Retrieve 5IJ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IJ9 from S2C, [Save to disk]
  • View 5IJ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IJ9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ij9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ij9] [5ij9_A] [5ij9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5IJ9: [Tubulin] [Tubulin_C ] by SMART
  • Other resources with information on 5IJ9
  • Community annotation for 5IJ9 at PDBWiki (http://pdbwiki.org)

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