5IJF Transport Protein date Mar 02, 2016
title Crystal Structure Of Human Serum Albumin In The Presence Of Zinc At Ph 9.0
authors K.B.Handing, I.G.Shabalin, D.R.Cooper, M.Grabowski, S.C.Almo, W.M York Structural Genomics Research Consortium (Nysgrc)
compound source
Molecule: Serum Albumin
Chain: A
Fragment: Residues 25-609
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Blood
symmetry Space Group: C 2 2 21
R_factor 0.213 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.614 121.560 140.036 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand UNL, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • antioxidant activity


    • Primary referenceCirculatory zinc transport is controlled by distinct interdomain sites on mammalian albumins., Handing KB, Shabalin IG, Kassaar O, Khazaipoul S, Blindauer CA, Stewart AJ, Chruszcz M, Minor W, Chem Sci. 2016 Nov 1;7(11):6635-6648. doi: 10.1039/c6sc02267g. Epub 2016 Aug 15. PMID:28567254
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk]
  • Biological Unit Coordinates (5ijf.pdb1.gz) 183 Kb
  • LPC: Ligand-Protein Contacts for 5IJF
  • CSU: Contacts of Structural Units for 5IJF
  • Structure Factors (609 Kb)
  • Retrieve 5IJF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IJF from S2C, [Save to disk]
  • Re-refined 5ijf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5IJF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5IJF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ijf_A] [5ijf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5IJF: [ALBUMIN ] by SMART
    • Other resources with information on 5IJF
  • Community annotation for 5IJF at PDBWiki (http://pdbwiki.org)

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