5IJH Inositol Phosphate Binding Protein date Mar 02, 2016
title Structure Of The Spx Domain Of The Human Phosphate Transport Complex With A Sulfate Ion
authors R.Wild, M.Hothorn
compound source
Molecule: Xenotropic And Polytropic Retrovirus Receptor 1
Chain: A, B
Fragment: Spx Domain, Unp Residues 1-207
Synonym: Protein Syg1 Homolog,Xenotropic And Polytropic Mur Leukemia Virus Receptor X3,X-Receptor,;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Xpr1, Syg1, Xr
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmh-Hc
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.244
length a length b length c angle alpha angle beta angle gamma
65.950 80.320 97.860 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.43 Å
ligand SO4 enzyme
Primary referenceControl of eukaryotic phosphate homeostasis by inositol polyphosphate sensor domains., Wild R, Gerasimaite R, Jung JY, Truffault V, Pavlovic I, Schmidt A, Saiardi A, Jessen HJ, Poirier Y, Hothorn M, Mayer A, Science. 2016 Apr 14. pii: aad9858. PMID:27080106
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (5ijh.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (5ijh.pdb2.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 5IJH
  • CSU: Contacts of Structural Units for 5IJH
  • Structure Factors (172 Kb)
  • Retrieve 5IJH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IJH from S2C, [Save to disk]
  • Re-refined 5ijh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IJH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IJH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ijh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ijh] [5ijh_A] [5ijh_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IJH
  • Community annotation for 5IJH at PDBWiki (http://pdbwiki.org)

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