5IJN Transport Protein date Mar 02, 2016
title Composite Structure Of The Inner Ring Of The Human Nuclear P Complex (32 Copies Of Nup205)
authors J.Kosinski, S.Mosalaganti, A.Von Appen, M.Beck
compound source
Molecule: Nuclear Pore Complex Protein Nup155
Chain: A, B, E, K, Q, W
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hela

Molecule: Nuclear Pore Complex Protein Nup93
Chain: C, I, O, U
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hela

Molecule: Nuclear Pore Complex Protein Nup205
Chain: D, J, P, V
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hela

Molecule: Nuclear Pore Complex Protein Nup54
Chain: F, L, R, X
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hela

Molecule: Nuclear Pore Complex Protein Nup58
Chain: G, M, S, Y
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hela

Molecule: Nuclear Pore Glycoprotein P62
Chain: H, N, T, Z
Synonym: 62 Kda Nucleoporin,Nucleoporin Nup62
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela
Gene: Nup62
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hela
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 21.40 Å
Gene
Ontology
ChainFunctionProcessComponent
C, O, I, U
  • intracellular transport of v...

  • F, L, X, R
  • intracellular transport of v...

  • K, E, Q, A, W, B
  • intracellular transport of v...

  • S, Y, M, G
  • intracellular transport of v...

  • T, N, Z, H
  • intracellular transport of v...

  • V, J, P, D
  • intracellular transport of v...

  • Primary referenceMolecular architecture of the inner ring scaffold of the human nuclear pore complex., Kosinski J, Mosalaganti S, von Appen A, Teimer R, DiGuilio AL, Wan W, Bui KH, Hagen WJ, Briggs JA, Glavy JS, Hurt E, Beck M, Science. 2016 Apr 15;352(6283):363-5. doi: 10.1126/science.aaf0643. PMID:27081072
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (11007 Kb) [Save to disk]
  • Biological Unit Coordinates (5ijn.pdb1.gz) 10035 Kb
  • CSU: Contacts of Structural Units for 5IJN
  • Retrieve 5IJN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IJN from S2C, [Save to disk]
  • View 5IJN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IJN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ijn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ijn_U] [5ijn_M] [5ijn_P] [5ijn_L] [5ijn_V] [5ijn_S] [5ijn_I] [5ijn_T] [5ijn_H] [5ijn_E] [5ijn_F] [5ijn_X] [5ijn_W] [5ijn_R] [5ijn_J] [5ijn_B] [5ijn_C] [5ijn_K] [5ijn_N] [5ijn_D] [5ijn_Q] [5ijn] [5ijn_Y] [5ijn_Z] [5ijn_G] [5ijn_O] [5ijn_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IJN
  • Community annotation for 5IJN at PDBWiki (http://pdbwiki.org)

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