5IJN Composite structure of the inner ring of the human nuclear pore complex (32 copies of Nup205) date
authors Kosinski, J., Mosalaganti, S., Appen, A.von., Beck, M.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 21.40
Gene
Ontology
ChainFunctionProcessComponent
C, O, I, U
  • intracellular transport of v...

  • F, L, X, R
  • intracellular transport of v...

  • K, E, Q, A, W, B
  • intracellular transport of v...

  • S, Y, M, G
  • intracellular transport of v...

  • T, N, Z, H
  • intracellular transport of v...

  • V, J, P, D
  • intracellular transport of v...

  • Primary referenceMolecular architecture of the inner ring scaffold of the human nuclear pore complex., Kosinski J, Mosalaganti S, von Appen A, Teimer R, DiGuilio AL, Wan W, Bui KH, Hagen WJ, Briggs JA, Glavy JS, Hurt E, Beck M, Science. 2016 Apr 15;352(6283):363-5. doi: 10.1126/science.aaf0643. PMID:27081072
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (11002 Kb) [Save to disk]
  • Biological Unit Coordinates (5ijn.pdb1.gz) 10033 Kb
  • CSU: Contacts of Structural Units for 5IJN
  • Retrieve 5IJN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IJN from S2C, [Save to disk]
  • View 5IJN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IJN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ijn_U] [5ijn_M] [5ijn_P] [5ijn_L] [5ijn_V] [5ijn_S] [5ijn_I] [5ijn_T] [5ijn_H] [5ijn_E] [5ijn_F] [5ijn_X] [5ijn_W] [5ijn_R] [5ijn_J] [5ijn_B] [5ijn_C] [5ijn_K] [5ijn_N] [5ijn_D] [5ijn_Q] [5ijn] [5ijn_Y] [5ijn_Z] [5ijn_G] [5ijn_O] [5ijn_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IJN
  • Community annotation for 5IJN at PDBWiki (http://pdbwiki.org)

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