5IJO Transport Protein date Mar 02, 2016
title Alternative Composite Structure Of The Inner Ring Of The Hum Pore Complex (16 Copies Of Nup188, 16 Copies Of Nup205)
authors J.Kosinski, S.Mosalaganti, A.Von Appen, M.Beck
compound source
Molecule: Nuclear Pore Complex Protein Nup155
Chain: A, B, E, K, Q, W
Synonym: 155 Kda Nucleoporin,Nucleoporin Nup155
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela
Gene: Nup155, Kiaa0791
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hela

Molecule: Nuclear Pore Complex Protein Nup93
Chain: C, I, O, U
Synonym: 93 Kda Nucleoporin,Nucleoporin Nup93
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela
Gene: Nup93, Kiaa0095
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hela

Molecule: Nuclear Pore Complex Protein Nup205
Chain: D, P
Synonym: 205 Kda Nucleoporin,Nucleoporin Nup205
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela
Gene: Nup205, C7orf14, Kiaa0225
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hela

Molecule: Nucleoporin P54
Chain: F, L, R, X
Synonym: 54 Kda Nucleoporin,Nuclear Pore Complex Protein Nu
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela
Gene: Nup54
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hela

Molecule: Nucleoporin P58p45
Chain: G, M, S, Y
Synonym: 58 Kda Nucleoporin,Nucleoporin-Like Protein 1,Nucl Complex Protein Nup58;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela
Gene: Nup58, Kiaa0410, Nupl1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hela

Molecule: Nuclear Pore Glycoprotein P62
Chain: H, N, T, Z
Synonym: 62 Kda Nucleoporin,Nucleoporin Nup62,Nuclear Pore Protein Nup62;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela
Gene: Nup62
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hela

Molecule: Nucleoporin Nup188 Homolog
Chain: J, V
Synonym: Hnup188,Nuclear Pore Complex Protein Nup188
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Hela
Gene: Nup188, Kiaa0169
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hela
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 21.40 Å
Gene
Ontology
ChainFunctionProcessComponent
C, O, I, U
  • intracellular transport of v...

  • F, L, X, R
  • intracellular transport of v...

  • K, E, Q, A, W, B
  • intracellular transport of v...

  • P, D
  • intracellular transport of v...

  • S, Y, M, G
  • intracellular transport of v...

  • T, N, Z, H
  • mitotic metaphase plate cong...
  • intracellular transport of v...

  • V, J
  • intracellular transport of v...

  • Primary referenceMolecular architecture of the inner ring scaffold of the human nuclear pore complex., Kosinski J, Mosalaganti S, von Appen A, Teimer R, DiGuilio AL, Wan W, Bui KH, Hagen WJ, Briggs JA, Glavy JS, Hurt E, Beck M, Science. 2016 Apr 15;352(6283):363-5. doi: 10.1126/science.aaf0643. PMID:27081072
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1459 Kb) [Save to disk]
  • Biological Unit Coordinates (5ijo.pdb1.gz) 10328 Kb
  • CSU: Contacts of Structural Units for 5IJO
  • Retrieve 5IJO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IJO from S2C, [Save to disk]
  • View 5IJO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IJO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ijo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ijo_V] [5ijo_Z] [5ijo_Q] [5ijo_S] [5ijo_D] [5ijo] [5ijo_W] [5ijo_I] [5ijo_H] [5ijo_K] [5ijo_B] [5ijo_E] [5ijo_G] [5ijo_F] [5ijo_T] [5ijo_P] [5ijo_L] [5ijo_R] [5ijo_O] [5ijo_N] [5ijo_Y] [5ijo_A] [5ijo_M] [5ijo_X] [5ijo_C] [5ijo_J] [5ijo_U]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IJO
  • Community annotation for 5IJO at PDBWiki (http://pdbwiki.org)

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