5IKC	Transferase	date	Mar 03, 2016
title	X-Ray Structure Of The N-Terminal Domain Of Human Doublecort Complex With Fab
authors	A.Ruf, M.Stihle, J.Benz, R.Thoma, M.G.Rudolph
compound		source
Molecule: Mab 6h10 Light Chain Chain: A, L Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Lc Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ighg Protein Chain: B, H Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Ighg Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Neuronal Migration Protein Doublecortin Chain: M, N Fragment: N-Terminal Domain, Unp Residues 133-221 Synonym: Doublin,Lissencephalin-X,Lis-X Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dcx, Dbcn, Lisx Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.198 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.858 110.399 75.092 90.00 106.54 90.00
method	X-Ray Diffraction	resolution	2.06 Å
ligand	CL, PCA	enzyme
Gene Ontology	Chain Function Process Component M, N
Primary reference	Crystal Structures of the Human Doublecortin C- and N-terminal Domains in Complex with Specific Antibodies., Burger D, Stihle M, Sharma A, Di Lello P, Benz J, D'Arcy B, Debulpaep M, Fry D, Huber W, Kremer T, Laeremans T, Matile H, Ross A, Rufer AC, Schoch G, Steinmetz MO, Steyaert J, Rudolph MG, Thoma R, Ruf A, J Biol Chem. 2016 May 10. pii: jbc.M116.726547. PMID:27226599

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (352 Kb) [Save to disk] Biological Unit Coordinates (5ikc.pdb1.gz) 172 Kb Biological Unit Coordinates (5ikc.pdb2.gz) 173 Kb LPC: Ligand-Protein Contacts for 5IKC CSU: Contacts of Structural Units for 5IKC Structure Factors (1341 Kb) Retrieve 5IKC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5IKC from S2C, [Save to disk] Re-refined 5ikc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5IKC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5IKC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ikc_L] [5ikc_A] [5ikc_M] [5ikc_B] [5ikc_H] [5ikc] [5ikc_N] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5IKC: [DCX] [IG_like] [IGv ] by SMART

Other resources with information on 5IKC

Community annotation for 5IKC at PDBWiki (http://pdbwiki.org)

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