5IKO Transferase date Mar 03, 2016
title Crystal Structure Of Human Brain Glycogen Phosphorylase
authors C.Mathieu, I.Li De La Sierra-Gallay, X.Xu, A.Haouz, F.Rodrigues-
compound source
Molecule: Glycogen Phosphorylase, Brain Form
Chain: A
Ec: 2.4.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Brain Isoform
Gene: Pygb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 6 2 2
R_factor 0.187 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
171.660 171.660 122.920 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand P6G, PLP, PO4 enzyme Transferase E.C.2.4.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (5iko.pdb1.gz) 528 Kb
  • LPC: Ligand-Protein Contacts for 5IKO
  • CSU: Contacts of Structural Units for 5IKO
  • Structure Factors (331 Kb)
  • Retrieve 5IKO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IKO from S2C, [Save to disk]
  • Re-refined 5iko structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IKO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IKO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5iko] [5iko_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IKO
  • Community annotation for 5IKO at PDBWiki (http://pdbwiki.org)

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