5ILU Dna Binding Protein date Mar 04, 2016
title Autoinhibited Etv4
authors F.G.Whitby, S.L.Currie
compound source
Molecule: Ets Translocation Variant 4
Chain: A
Synonym: Adenovirus E1a Enhancer-Binding Protein,E1a-F,Poly Enhancer Activator 3 Homolog,Protein Pea3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Etv4, E1af, Pea3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.173 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.866 50.866 68.621 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.10 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructured and disordered regions cooperatively mediate DNA-binding autoinhibition of ETS factors ETV1, ETV4 and ETV5., Currie SL, Lau DKW, Doane JJ, Whitby FG, Okon M, McIntosh LP, Graves BJ, Nucleic Acids Res. 2017 Mar 17;45(5):2223-2241. doi: 10.1093/nar/gkx068. PMID:28161714
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (5ilu.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (5ilu.pdb2.gz) 82 Kb
  • CSU: Contacts of Structural Units for 5ILU
  • Structure Factors (1213 Kb)
  • Retrieve 5ILU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ILU from S2C, [Save to disk]
  • Re-refined 5ilu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5ILU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ILU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ilu_A] [5ilu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ILU
  • Community annotation for 5ILU at PDBWiki (http://pdbwiki.org)

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