5IM6 Protein Binding date Mar 05, 2016
title Crystal Structure Of Designed Two-Component Self-Assembling Icosahedral Cage I32-28
authors Y.A.Liu, D.Cascio, M.R.Sawaya, J.B.Bale, M.J.Collazo, C.Thomas, W. N.P.King, D.Baker, T.O.Yeates
compound source
Molecule: Designed Self-Assembling Icosahedral Cage I32-28 Subunit;
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
Fragment: Putative Atp:Cob(I)Alamin Adenosyltransferase Res 183;
Synonym: Designed Atp:Cob(I)Alamin Adenosyltransferase
Engineered: Yes
Mutation: Yes
Organism_scientific: Burkholderia Thailandensis E264
Organism_taxid: 271848
Strain: E264 Atcc 700388 Dsm 13276 Cip 106301
Gene: Bth_i1293, Dr63_1050
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b

Molecule: Designed Self-Assembling Icosahedral Cage I32-28 Subunit;
Chain: U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, I, j, k, l
Fragment: Uncharacterized Protein
Engineered: Yes
Mutation: Yes

Organism_scientific: Deinococcus Radiodurans R1
Organism_taxid: 243230
Strain: Atcc 13939 Dsm 20539 Jcm 16871 Lmg 4051 Nbr Ncimb 9279 R1 Vkm B-1422;
Gene: Dr_2006
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b
symmetry Space Group: H 3
R_factor 0.226 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
284.170 284.170 640.470 90.00 90.00 120.00
method X-Ray Diffractionresolution 5.59 Å
Gene BTH ; DR63 ; DR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1963 Kb) [Save to disk]
  • Biological Unit Coordinates (5im6.pdb1.gz) 5821 Kb
  • CSU: Contacts of Structural Units for 5IM6
  • Structure Factors (1082 Kb)
  • Retrieve 5IM6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IM6 from S2C, [Save to disk]
  • Re-refined 5im6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IM6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IM6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5im6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5im6_A] [5im6_K] [5im6_k] [5im6_Q] [5im6_l] [5im6_V] [5im6_T] [5im6_W] [5im6_R] [5im6_J] [5im6_M] [5im6_n] [5im6_N] [5im6_D] [5im6_E] [5im6_i] [5im6_S] [5im6_P] [5im6_G] [5im6_c] [5im6_Z] [5im6_m] [5im6_H] [5im6_B] [5im6_X] [5im6_L] [5im6_f] [5im6_I] [5im6_U] [5im6] [5im6_b] [5im6_Y] [5im6_e] [5im6_d] [5im6_O] [5im6_h] [5im6_F] [5im6_C] [5im6_j] [5im6_g] [5im6_a]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IM6
  • Community annotation for 5IM6 at PDBWiki (http://pdbwiki.org)

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