5IMG Hydrolase date Mar 06, 2016
title C9a Mutant Of C69-Family Cysteine Dipeptidase From Lactobaci Farciminis
authors R.Kono, K.Watanabe
compound source
Molecule: Dipeptidase
Chain: A, B, C, D, E, F, G, H, I, J
Engineered: Yes
Mutation: Yes
Organism_scientific: Lactobacillus Farciminis Kctc 3681 = D
Organism_taxid: 936140
Strain: Kctc 3681 = Dsm 20184
Gene: Fc68_gl001211
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 1 21 1
R_factor 0.138 R_Free 0.169
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.944 182.788 158.523 90.00 102.19 90.00
method X-Ray Diffractionresolution 1.84 Å
ligand CO, GOL enzyme
Gene FC68
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, E, B, H, C, D, I, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (869 Kb) [Save to disk]
  • Biological Unit Coordinates (5img.pdb1.gz) 437 Kb
  • Biological Unit Coordinates (5img.pdb2.gz) 433 Kb
  • LPC: Ligand-Protein Contacts for 5IMG
  • CSU: Contacts of Structural Units for 5IMG
  • Structure Factors (11763 Kb)
  • Retrieve 5IMG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IMG from S2C, [Save to disk]
  • Re-refined 5img structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IMG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IMG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5img from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5img_A] [5img_D] [5img_C] [5img_G] [5img_H] [5img_J] [5img_F] [5img_E] [5img] [5img_B] [5img_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IMG
  • Community annotation for 5IMG at PDBWiki (http://pdbwiki.org)

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