5IN7 Transferase date Mar 07, 2016
title X-Ray Structure Of The N-Terminal Domain Of Human Doublecort
authors A.Ruf, J.Benz, D.Burger, B.D'Arcy, M.Debulpaep, P.Di Lello, D.Fry, T.Kremer, T.Laeremans, H.Matile, A.Ross, M.G.Rudolph, A.C.Rufer, M.O.Steinmetz, J.Steyaert, G.Schoch, M.Stihle, R.Thoma
compound source
Molecule: Neuronal Migration Protein Doublecortin
Chain: A, B
Fragment: N-Terminal Domain, Unp Residues 127-231
Synonym: Doublin,Lissencephalin-X,Lis-X
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dcx, Dbcn, Lisx
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4 2 2
R_factor 0.196 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.156 82.156 139.897 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.48 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal Structures of the Human Doublecortin C- and N-terminal Domains in Complex with Specific Antibodies., Burger D, Stihle M, Sharma A, Di Lello P, Benz J, D'Arcy B, Debulpaep M, Fry D, Huber W, Kremer T, Laeremans T, Matile H, Ross A, Rufer AC, Schoch G, Steinmetz MO, Steyaert J, Rudolph MG, Thoma R, Ruf A, J Biol Chem. 2016 May 10. pii: jbc.M116.726547. PMID:27226599
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (5in7.pdb1.gz) 18 Kb
  • Biological Unit Coordinates (5in7.pdb2.gz) 17 Kb
  • CSU: Contacts of Structural Units for 5IN7
  • Structure Factors (242 Kb)
  • Retrieve 5IN7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IN7 from S2C, [Save to disk]
  • Re-refined 5in7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IN7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IN7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5in7_B] [5in7] [5in7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5IN7: [DCX ] by SMART
  • Other resources with information on 5IN7
  • Community annotation for 5IN7 at PDBWiki (http://pdbwiki.org)

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