5IND	Immune System	date	Mar 07, 2016
title	Crystal Structure Of Hla-B5801, A Protective Hla Allele For Infection
authors	X.Li, J.H.Wang
compound		source
Molecule: Hla Class I Histocompatibility Antigen, B-58 Alph Chain: A, C Synonym: Bw-58,Mhc Class I Antigen B58 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hla-B, Hlab Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
Molecule: Beta-2-Microglobulin Chain: B, D Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: B2m, Cdabp0092, Hdcma22p Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
Molecule: Gln-Ala-Ser-Gln-Asp-Val-Lys-Asn-Trp Chain: E, F Engineered: Yes		Synthetic: Yes Organism_scientific: Unidentified Organism_taxid: 32644
symmetry	Space Group: P 21 21 21	R_factor 0.187 R_Free 0.229
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.413 82.280 157.720 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.13 Å
Gene Ontology	Chain Function Process Component D, B cellular response to iron io...
Primary reference	Crystal structure of HLA-B*5801, a protective HLA allele for HIV-1 infection., Li X, Lamothe PA, Ng R, Xu S, Teng M, Walker BD, Wang JH, Protein Cell. 2016 Oct;7(10):761-765. PMID:27638468

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk] Biological Unit Coordinates (5ind.pdb1.gz) 68 Kb Biological Unit Coordinates (5ind.pdb2.gz) 70 Kb CSU: Contacts of Structural Units for 5IND Structure Factors (764 Kb) Retrieve 5IND in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5IND from S2C, [Save to disk] Re-refined 5ind structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5IND in 3D

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Visual 3D analysis of 5IND

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ind_B] [5ind_E] [5ind_F] [5ind_C] [5ind_A] [5ind] [5ind_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5IND: [IGc1 ] by SMART

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