5IOH Hydrolase Protein Binding date Mar 08, 2016
title Repoman-Pp1a (Protein Phosphatase 1, Alpha Isoform) Holoenzy
authors G.S.Kumar, W.Peti, R.Page
compound source
Molecule: Serinethreonine-Protein Phosphatase Pp1-Alpha Ca Subunit;
Chain: A, C
Fragment: Unp Residues 7-300
Synonym: Pp-1a
Ec: 3.1.3.16
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ppp1ca, Ppp1a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Rp1b

Molecule: Cell Division Cycle-Associated Protein 2
Chain: B, D
Fragment: Unp Residues 383-441
Synonym: Recruits Pp1 Onto Mitotic Chromatin At Anaphase Pr Repo-Man;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdca2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.176 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
160.769 57.089 73.635 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.57 Å
ligand
enzyme Hydrolase E.C.3.1.3.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceThe Ki-67 and RepoMan mitotic phosphatases assemble via an identical, yet novel mechanism., Kumar GS, Gokhan E, De Munter S, Bollen M, Vagnarelli P, Peti W, Page R, Elife. 2016 Aug 30;5. pii: e16539. doi: 10.7554/eLife.16539. PMID:27572260
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (5ioh.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (5ioh.pdb2.gz) 55 Kb
  • CSU: Contacts of Structural Units for 5IOH
  • Structure Factors (268 Kb)
  • Retrieve 5IOH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IOH from S2C, [Save to disk]
  • Re-refined 5ioh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IOH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IOH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ioh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ioh_C] [5ioh] [5ioh_A] [5ioh_B] [5ioh_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5IOH: [PP2Ac ] by SMART
  • Other resources with information on 5IOH
  • Community annotation for 5IOH at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science