5IPL | Transcription, Transferase Dna Rna | date | Mar 09, 2016 |
||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
title | Sigmas-Transcription Initiation Complex With 4-Nt Nascent Rn | ||||||||||||||||||||||||||
authors | B.Liu, Y.Zuo, T.A.Steitz | ||||||||||||||||||||||||||
compound | source | ||||||||||||||||||||||||||
Molecule: Dna-Directed Rna Polymerase Subunit Alpha Chain: A, B Fragment: Unp Residues 1-235 Synonym: Rnap Subunit Alpha, Rna Polymerase Subunit Alpha, Transcriptase Subunit Alpha; Ec: 2.7.7.6 Engineered: Yes |
Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Rpoa, Pez, Phs, Sez, B3295, Jw3257 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 | ||||||||||||||||||||||||||
Molecule: Dna-Directed Rna Polymerase Subunit Beta Chain: C Synonym: Rnap Subunit Beta, Rna Polymerase Subunit Beta, Transcriptase Subunit Beta; Ec: 2.7.7.6 Engineered: Yes |
Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Rpob, Gron, Nitb, Rif, Ron, Stl, Stv, Tabd, B3987, Jw Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 | ||||||||||||||||||||||||||
Molecule: Dna-Directed Rna Polymerase Subunit Beta' Chain: D Synonym: Rnap Subunit Beta', Rna Polymerase Subunit Beta', Transcriptase Subunit Beta'; Ec: 2.7.7.6 Engineered: Yes |
Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Rpoc, Tabb, B3988, Jw3951 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 | ||||||||||||||||||||||||||
Molecule: Dna-Directed Rna Polymerase Subunit Omega Chain: E Synonym: Rnap Omega Subunit, Rna Polymerase Omega Subunit, Transcriptase Subunit Omega; Ec: 2.7.7.6 Engineered: Yes |
Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Rpoz, B3649, Jw3624 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 | ||||||||||||||||||||||||||
Molecule: Rna Polymerase Sigma Factor Rpos Chain: F Synonym: Sigma S, Sigma-38 Engineered: Yes |
Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Rpos, Appr, Katf, Nur, Otsx, Sigs, B2741, Jw5437 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 | ||||||||||||||||||||||||||
Molecule: Synthetic Nontemplate Strand Dna (50-Mer) Chain: 1 Engineered: Yes |
Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 | ||||||||||||||||||||||||||
Molecule: Synthetic Template Strand Dna (50-Mer) Chain: 2 Engineered: Yes |
Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 | ||||||||||||||||||||||||||
Molecule: Nascent Rna 4-Mer Chain: 3 Engineered: Yes |
Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 | ||||||||||||||||||||||||||
symmetry | Space Group: P 21 21 21 |
| |||||||||||||||||||||||||
crystal cell |
| ||||||||||||||||||||||||||
method | X-Ray Diffraction | resolution | 3.60 Å | ||||||||||||||||||||||||
ligand | DPO, GTP, MG, ZN | enzyme | Transferase E.C.2.7.7.6 BRENDA | ||||||||||||||||||||||||
Gene Ontology |
| ||||||||||||||||||||||||||
Primary reference | Structures of E. coli sigmaS-transcription initiation complexes provide new insights into polymerase mechanism., Liu B, Zuo Y, Steitz TA, Proc Natl Acad Sci U S A. 2016 Mar 28. pii: 201520555. PMID:27035955 |
Data retrieval |
View 5IPL in 3D |
Visual 3D analysis of 5IPL |
Structure-derived information |
Sequence-derived information |
Other resources with information on 5IPL |
OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |