5IQL	Protein Binding	date	Mar 11, 2016
title	Crystal Structure Of Yeats2 Yeats Bound To H3k27cr Peptide
authors	H.Li, D.Zhao, H.Guan
compound		source
Molecule: Yeats Domain-Containing Protein 2 Chain: A Fragment: Yeats Domain (Unp Residues 201-332) Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Yeats2, Kiaa1197 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Psumoh10
Molecule: Histone H3.1 Chain: B Fragment: H3 Peptide (Unp Residues 25-32) Engineered: Yes Other_details: Kcr: Lysine Crotonylation		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: I 4 2 2	R_factor 0.204 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 75.791 75.791 119.331 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	KCR	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	YEATS2 is a selective histone crotonylation reader., Zhao D, Guan H, Zhao S, Mi W, Wen H, Li Y, Zhao Y, Allis CD, Shi X, Li H, Cell Res. 2016 May;26(5):629-32. doi: 10.1038/cr.2016.49. Epub 2016 Apr 22. PMID:27103431

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (5iql.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 5IQL CSU: Contacts of Structural Units for 5IQL Structure Factors (177 Kb) Retrieve 5IQL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5IQL from S2C, [Save to disk] Re-refined 5iql structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5IQL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5IQL

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5iql] [5iql_B] [5iql_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5IQL

Community annotation for 5IQL at PDBWiki (http://pdbwiki.org)

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