5IRO	Immune System Transcription	date	Mar 14, 2016
title	Crystal Structure Of A Complex Between The Human Adenovirus 19k Protein And Mhc Class Molecule Hla-A2tax
authors	L.Li, M.Bouvier
compound		source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha Chain: A, E, I, M, Q, U Synonym: Mhc Class I Antigen A2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hla-A, Hlaa Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21-Gold(De3)Plyss Ag Expression_system_variant: Escherichia Coli Expression_system_cell_line: Bl21 Expression_system_organ: Escherichia Coli Expression_system_tissue: Escherichia Coli Expression_system_cell: Bl21(De3)Plyss Expression_system_vector_type: Plyss Expression_system_plasmid: Plyss
Molecule: Tax Protein Chain: B, F, J, N, R, V Engineered: Yes Other_details: Human T-Cell Lymphotropic Virus Type 1, Htlv		Synthetic: Yes Organism_scientific: Human T-Lymphotropic Virus 1 Organism_taxid: 11908
Molecule: Beta-2-Microglobulin Chain: C, G, K, O, S, W Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: B2m, Cdabp0092, Hdcma22p Expression_system: Pichia Pastoris Expression_system_taxid: 4922
Molecule: E3 19 Kda Protein Chain: D, H, L, P, T, X Engineered: Yes		Organism_scientific: Human Adenovirus E Serotype 4 Organism_common: Hadv-4 Organism_taxid: 28280 Gene: E3 Expression_system: Human Adenovirus 4 Expression_system_taxid: 28280
symmetry	Space Group: P 3	R_factor 0.257 R_Free 0.288
crystal cell	length a length b length c angle alpha angle beta angle gamma 165.727 165.727 122.858 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.64 Å
Gene Ontology	Chain Function Process Component S, O, W, K, C, G cellular response to iron io... T, X, P, H, D, L
Primary reference	Structure of the Adenovirus Type 4 (Species E) E3-19K/HLA-A2 Complex Reveals Species-Specific Features in MHC Class I Recognition., Li L, Santarsiero BD, Bouvier M, J Immunol. 2016 Aug 15;197(4):1399-407. doi: 10.4049/jimmunol.1600541. Epub 2016 , Jul 6. PMID:27385781

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (468 Kb) [Save to disk] Biological Unit Coordinates (5iro.pdb1.gz) 82 Kb Biological Unit Coordinates (5iro.pdb2.gz) 83 Kb Biological Unit Coordinates (5iro.pdb3.gz) 81 Kb Biological Unit Coordinates (5iro.pdb4.gz) 83 Kb Biological Unit Coordinates (5iro.pdb5.gz) 82 Kb Biological Unit Coordinates (5iro.pdb6.gz) 80 Kb CSU: Contacts of Structural Units for 5IRO Structure Factors (2201 Kb) Retrieve 5IRO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5IRO from S2C, [Save to disk] Re-refined 5iro structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5IRO in 3D

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Visual 3D analysis of 5IRO

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5iro_O] [5iro_M] [5iro_U] [5iro_V] [5iro_A] [5iro_Q] [5iro_N] [5iro] [5iro_S] [5iro_J] [5iro_L] [5iro_G] [5iro_F] [5iro_P] [5iro_K] [5iro_I] [5iro_C] [5iro_B] [5iro_T] [5iro_D] [5iro_W] [5iro_E] [5iro_H] [5iro_R] [5iro_X] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5IRO: [IGc1 ] by SMART

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