5ISO Transferase date Mar 15, 2016
title Structure Of Full Length Human Ampk (Non-Phosphorylated At T Complex With A Small Molecule Activator, A Benzimidazole De (991)
authors B.Xiao, J.A.Hubbard, S.J.Gamblin
compound source
Molecule: 5'-Amp-Activated Protein Kinase Catalytic Subunit
Chain: A, C
Synonym: Ampk Subunit Alpha-2,Acetyl-Coa Carboxylase Kinase Kinase,Hydroxymethylglutaryl-Coa Reductase Kinase,Hmgcr Kin
Ec: 2.7.11.1,2.7.11.27,2.7.11.31
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prkaa2, Ampk, Ampk2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-Amp-Activated Protein Kinase Subunit Beta-1
Chain: B, D
Synonym: Ampkb
Engineered: Yes
Other_details: B 108 Ser Is Phosphorylated, And Renamed To 16 Residues (Mglndifeaqkiewhe) At The N-Terminal Of Beta-1 Expression Tag;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prkab1, Ampk
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-Amp-Activated Protein Kinase Subunit Gamma-1
Chain: E, F
Synonym: Ampkg
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prkag1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.178 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.420 129.390 139.280 90.00 92.73 90.00
method X-Ray Diffractionresolution 2.63 Å
ligand 992, AMP, SEP, STU enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • histone serine kinase activi...


    • D, B


    F, E
  • cAMP-dependent protein kinas...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (642 Kb) [Save to disk]
  • Biological Unit Coordinates (5iso.pdb1.gz) 324 Kb
  • Biological Unit Coordinates (5iso.pdb2.gz) 309 Kb
  • LPC: Ligand-Protein Contacts for 5ISO
  • CSU: Contacts of Structural Units for 5ISO
  • Structure Factors (1612 Kb)
  • Retrieve 5ISO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ISO from S2C, [Save to disk]
  • Re-refined 5iso structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5ISO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5ISO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5iso] [5iso_B] [5iso_D] [5iso_A] [5iso_C] [5iso_E] [5iso_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5ISO
  • Community annotation for 5ISO at PDBWiki (http://pdbwiki.org)

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