5IU2 Transferase date Mar 17, 2016
title Discovery Of Imidazoquinolines As A Novel Class Of Potent, S And In Vivo Efficacious Cot Kinase Inhibitors
authors S.Gutmann, A.Hinniger
compound source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase 8
Chain: A, B
Synonym: Cancer Osaka Thyroid Oncogene,Proto-Oncogene C-Cot Serinethreonine-Protein Kinase Cot,Tumor Progression Locus
Ec: 2.7.11.25
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 2 21 21
R_factor 0.233 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.480 87.430 125.120 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 6DA enzyme Transferase E.C.2.7.11.25 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (205 Kb) [Save to disk]
  • Biological Unit Coordinates (5iu2.pdb1.gz) 101 Kb
  • Biological Unit Coordinates (5iu2.pdb2.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 5IU2
  • CSU: Contacts of Structural Units for 5IU2
  • Structure Factors (244 Kb)
  • Retrieve 5IU2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IU2 from S2C, [Save to disk]
  • Re-refined 5iu2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IU2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IU2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5iu2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5iu2_A] [5iu2] [5iu2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5IU2: [STYKc ] by SMART
  • Other resources with information on 5IU2
  • Community annotation for 5IU2 at PDBWiki (http://pdbwiki.org)

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