5IUD	Transferase Dna	date	Mar 17, 2016
title	Human Dna Polymerase Alpha In Binary Complex With A Dna:Dna Primer
authors	J.Coloma, A.K.Aggarwal
compound		source
Molecule: Dna Polymerase Alpha Catalytic Subunit Chain: A, D, G, J Fragment: Unp Residues 338-1255 Synonym: Dna Polymerase Alpha Catalytic Subunit P180 Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pola1, Pola Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna Template Chain: B, E, H, K Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
Molecule: Dna Primer Chain: C, F, I, L Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 1 21 1	R_factor 0.183 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 137.040 132.030 163.139 90.00 109.13 90.00
method	X-Ray Diffraction	resolution	3.30 Å
ligand		enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A, J, D, G
Primary reference	Human DNA polymerase alpha in binary complex with a DNA:DNA template-primer., Coloma J, Johnson RE, Prakash L, Prakash S, Aggarwal AK, Sci Rep. 2016 Apr 1;6:23784. doi: 10.1038/srep23784. PMID:27032819

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1178 Kb) [Save to disk] Biological Unit Coordinates (5iud.pdb1.gz) 297 Kb Biological Unit Coordinates (5iud.pdb2.gz) 301 Kb Biological Unit Coordinates (5iud.pdb3.gz) 292 Kb Biological Unit Coordinates (5iud.pdb4.gz) 294 Kb CSU: Contacts of Structural Units for 5IUD Structure Factors (1744 Kb) Retrieve 5IUD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5IUD from S2C, [Save to disk] Re-refined 5iud structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5IUD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5IUD

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5iud_A] [5iud] [5iud_K] [5iud_E] [5iud_F] [5iud_I] [5iud_G] [5iud_C] [5iud_L] [5iud_J] [5iud_H] [5iud_D] [5iud_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5IUD: [POLBc ] by SMART

Other resources with information on 5IUD

Community annotation for 5IUD at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---