5IUE Protein Binding date Mar 17, 2016
title Human Leukocyte Antigen F (Hla-F) Presents Peptides And Regu Immunity Through Interactions With Nk-Cell Receptors
authors C.L.Dulberger, E.J.Adams
compound source
Molecule: Cdna Flj39643 Fis, Clone Smint2004023, Highly Sim Hla Class I Histocompatibility Antigen, Alphachain F;
Chain: A, E, G, I
Fragment: Unp Residues 22-305
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell_line: High Five
Expression_system_plasmid: Pacgp67a

Molecule: Beta-2-Microglobulin
Chain: B, F, H, J
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell_line: High Five
Expression_system_plasmid: Pacgp67a

Molecule: Peptide Leu-Ile-Leu-Arg-Trp-Glu-Gln-Asp
Chain: K, L, M, N

Organism_scientific: Trichoplusia Ni
Organism_taxid: 7111
Cell_line: High Five
symmetry Space Group: P 21 21 21
R_factor 0.197 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.453 115.324 168.361 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.62 Å
Gene
Ontology
ChainFunctionProcessComponent
H, F, J, B


Primary referenceHuman Leukocyte Antigen F Presents Peptides and Regulates Immunity through Interactions with NK Cell Receptors., Dulberger CL, McMurtrey CP, Holzemer A, Neu KE, Liu V, Steinbach AM, Garcia-Beltran WF, Sulak M, Jabri B, Lynch VJ, Altfeld M, Hildebrand WH, Adams EJ, Immunity. 2017 Jun 20;46(6):1018-1029.e7. doi: 10.1016/j.immuni.2017.06.002. PMID:28636952
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (538 Kb) [Save to disk]
  • Biological Unit Coordinates (5iue.pdb1.gz) 134 Kb
  • Biological Unit Coordinates (5iue.pdb2.gz) 134 Kb
  • Biological Unit Coordinates (5iue.pdb3.gz) 133 Kb
  • Biological Unit Coordinates (5iue.pdb4.gz) 135 Kb
  • CSU: Contacts of Structural Units for 5IUE
  • Structure Factors (971 Kb)
  • Retrieve 5IUE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IUE from S2C, [Save to disk]
  • Re-refined 5iue structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IUE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IUE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5iue from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5iue_B] [5iue_A] [5iue_N] [5iue_K] [5iue_L] [5iue_F] [5iue_M] [5iue_G] [5iue_H] [5iue_E] [5iue_J] [5iue_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IUE
  • Community annotation for 5IUE at PDBWiki (http://pdbwiki.org)

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