5IVD Hydrolase date Mar 20, 2016
title The Alpha-Esterase-7 Carboxylesterase, E3, From The Blowfly Cuprina: Apo-Enzyme Qfit Multi-Conformer Model
authors G.J.Correy, C.J.Jackson
compound source
Molecule: Carboxylic Ester Hydrolase
Chain: A
Ec: 3.1.1.-
Engineered: Yes
Organism_scientific: Lucilia Cuprina
Organism_common: Green Bottle Fly
Organism_taxid: 7375
Gene: Lcae7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.178 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.574 100.472 221.715 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.71 Å
ligand
enzyme Hydrolase E.C.3.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMapping the Accessible Conformational Landscape of an Insect Carboxylesterase Using Conformational Ensemble Analysis and Kinetic Crystallography., Correy GJ, Carr PD, Meirelles T, Mabbitt PD, Fraser NJ, Weik M, Jackson CJ, Structure. 2016 Jun 7;24(6):977-87. doi: 10.1016/j.str.2016.04.009. Epub 2016 May, 19. PMID:27210287
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (5ivd.pdb1.gz) 138 Kb
  • CSU: Contacts of Structural Units for 5IVD
  • Structure Factors (1218 Kb)
  • Retrieve 5IVD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IVD from S2C, [Save to disk]
  • Re-refined 5ivd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IVD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IVD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ivd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ivd] [5ivd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IVD
  • Community annotation for 5IVD at PDBWiki (http://pdbwiki.org)

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