5IVW Transcription Dna date Mar 21, 2016
title Human Core Tfiih Bound To Dna Within The Pic
authors Y.He, C.Yan, J.Fang, C.Inouye, R.Tjian, I.Ivanov, E.Nogales
compound source
Molecule: Tfiih Basal Transcription Factor Complex Helicase Subunit;
Chain: V
Synonym: Basic Transcription Factor 2 89 Kda Subunit, Btf2 Excision Repair Protein Ercc-3, Dna Repair Protein Compleme Cells, Tfiih Basal Transcription Factor Complex 89 Kda Subu P89, Xeroderma Pigmentosum Group B-Complementing Protein;
Ec: 3.6.4.12
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Tfiih Basal Transcription Factor Complex Helicase Subunit;
Chain: W
Synonym: Basic Transcription Factor 2 80 Kda Subunit, Btf2 Dna Excision Repair Protein Ercc-2, Dna Repair Protein Comp Xp-D Cells, Tfiih Basal Transcription Factor Complex 80 Kda Tfiih P80, Xeroderma Pigmentosum Group D-Complementing Prot
Ec: 3.6.4.12

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: General Transcription Factor Iih Subunit 2
Chain
Synonym: Basic Transcription Factor 2 44 Kda Subunit, Btf2 General Transcription Factor Iih Polypeptide 2, Tfiih Basal Transcription Factor Complex P44 Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: General Transcription Factor Iih Subunit 5
Chain: 1
Synonym: General Transcription Factor Iih Polypeptide 5, Tf Ortholog, Tfiih Basal Transcription Factor Complex Ttd-A Su

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: General Transcription Factor Iih Subunit 4
Chain: 2
Synonym: Basic Transcription Factor 2 52 Kda Subunit, Btf2 General Transcription Factor Iih Polypeptide 4, Tfiih Basal Transcription Factor Complex P52 Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: General Transcription Factor Iih Subunit 3
Chain: 3
Synonym: P34, Basic Transcription Factor 2 44 Kda Subunit, General Transcription Factor Iih Polypeptide 2, Tfiih Basal Transcription Factor Complex P44 Subunit;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Scp-X
Chain: X
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Scp-Y
Chain: Y
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 10.00 Å
ligand
enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
0


1


2
  • ATPase activator activity


  • 3


    V


    W


    Primary referenceNear-atomic resolution visualization of human transcription promoter opening., He Y, Yan C, Fang J, Inouye C, Tjian R, Ivanov I, Nogales E, Nature. 2016 May 11;533(7603):359-65. doi: 10.1038/nature17970. PMID:27193682
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (283 Kb) [Save to disk]
  • Biological Unit Coordinates (5ivw.pdb1.gz) 271 Kb
  • CSU: Contacts of Structural Units for 5IVW
  • Retrieve 5IVW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IVW from S2C, [Save to disk]
  • View 5IVW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IVW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ivw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ivw_V] [5ivw] [5ivw_X] [5ivw_3] [5ivw_W] [5ivw_1] [5ivw_Y] [5ivw_2] [5ivw_0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5IVW: [C1_4] [DEXDc] [DEXDc2] [HELICc] [HELICc2] [Tbf5] [VWA ] by SMART
  • Other resources with information on 5IVW
  • Community annotation for 5IVW at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science