5IZR	Hydrolase Hydrolase Inhibitor	date	Mar 25, 2016
title	Human Givd Cytosolic Phospholipase A2 In Complex With Methyl Linolenyl Fluorophosphonate Inhibitor And Terbium Chloride
authors	H.Wang, M.G.Klein
compound		source
Molecule: Cytosolic Phospholipase A2 Delta Chain: A, B, C, D Fragment: Unp Residues 2-810 Synonym: Cpla2-Delta,Phospholipase A2 Group Ivd Ec: 3.1.1.4 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pla2g4d Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 1 21 1	R_factor 0.230 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 100.824 112.667 159.200 90.00 90.03 90.00
method	X-Ray Diffraction	resolution	3.25 Å
ligand	7FA, TB	enzyme	Hydrolase E.C.3.1.1.4 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structure of Human GIVD Cytosolic Phospholipase A2 Reveals Insights into Substrate Recognition., Wang H, Klein MG, Snell G, Lane W, Zou H, Levin I, Li K, Sang BC, J Mol Biol. 2016 Jul 3;428(13):2769-79. doi: 10.1016/j.jmb.2016.05.012. Epub 2016, May 21. PMID:27220631

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (446 Kb) [Save to disk] Biological Unit Coordinates (5izr.pdb1.gz) 116 Kb Biological Unit Coordinates (5izr.pdb2.gz) 115 Kb Biological Unit Coordinates (5izr.pdb3.gz) 113 Kb Biological Unit Coordinates (5izr.pdb4.gz) 114 Kb LPC: Ligand-Protein Contacts for 5IZR CSU: Contacts of Structural Units for 5IZR Structure Factors (3811 Kb) Retrieve 5IZR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5IZR from S2C, [Save to disk] Re-refined 5izr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5IZR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5IZR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5izr_D] [5izr_C] [5izr_B] [5izr_A] [5izr] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5IZR: [C2] [PLAc ] by SMART

Other resources with information on 5IZR

Community annotation for 5IZR at PDBWiki (http://pdbwiki.org)

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