5J11 Signaling Protein date Mar 28, 2016
title Structure Of Human Tslp In Complex With Tslpr And Il-7ralpha
authors K.Verstraete, S.N.Savvides
compound source
Molecule: Thymic Stromal Lymphopoietin
Chain: A
Engineered: Yes
Mutation: Yes
Other_details: Before Crystallisation, The N-Terminal His-T (Residues 1 - 17, Mgsshhhhhhssglvpr) Was Removed By Thrombi Cleavage. Residues 127 To 131 Of Tslp (127-Rrkrk-131) (Acco The Reference Sequence Numbering Scheme For Tslp) Were Dele Construct Used For Crystallization.;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tslp
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b-Htslpdelta127-131

Molecule: Interleukin-7 Receptor Subunit Alpha
Chain: B
Engineered: Yes
Other_details: Before Crystallisation, The N-Terminal His-T (Residues 1 - 17, Mgsshhhhhhssglvpr) Was Removed By Thrombi Cleavage.;

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il7r
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b-Hil7ralpha

Molecule: Cytokine Receptor-Like Factor 2
Chain: C
Synonym: Cytokine Receptor-Like 2,Il-Xr,Thymic Stromal Lymp Protein Receptor,Tslp Receptor;
Engineered: Yes
Mutation: Yes
Other_details: The Signal Peptide (Residues 1 - 24) Is Remo The Mature Protein.

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Crlf2, Crl2, Ilxr, Tslpr
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s Mgat1--
Expression_system_atcc_number: Crl-3022
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdna4to-Htslpr-N47q-His
symmetry Space Group: C 1 2 1
R_factor 0.191 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.783 66.644 91.971 90.00 109.20 90.00
method X-Ray Diffractionresolution 2.56 Å
ligand NAG, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and antagonism of the receptor complex mediated by human TSLP in allergy and asthma., Verstraete K, Peelman F, Braun H, Lopez J, Van Rompaey D, Dansercoer A, Vandenberghe I, Pauwels K, Tavernier J, Lambrecht BN, Hammad H, De Winter H, Beyaert R, Lippens G, Savvides SN, Nat Commun. 2017 Apr 3;8:14937. doi: 10.1038/ncomms14937. PMID:28368013
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (340 Kb) [Save to disk]
  • Biological Unit Coordinates (5j11.pdb1.gz) 332 Kb
  • LPC: Ligand-Protein Contacts for 5J11
  • CSU: Contacts of Structural Units for 5J11
  • Structure Factors (225 Kb)
  • Retrieve 5J11 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J11 from S2C, [Save to disk]
  • Re-refined 5j11 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5J11 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5J11
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5j11 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j11] [5j11_A] [5j11_C] [5j11_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5J11
  • Community annotation for 5J11 at PDBWiki (http://pdbwiki.org)

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