5J6R	Viral Protein	date	Apr 05, 2016
title	Crystal Structure Of Human Papillomavirus Type 59 L1 Pentame
authors	Z.H.Li, X.D.Yan, H.Yu, Y.Gu, S.W.Li
compound		source
Molecule: Major Capsid Protein L1 Chain: A, B, C, D, E, F, G, H, I, J Fragment: Unp Residues 10-508 Engineered: Yes Mutation: Yes		Organism_scientific: Human Papillomavirus Type 59 Organism_taxid: 37115 Gene: Orf Putative L1, L1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Er2566 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pto-T7
symmetry	Space Group: P 1 21 1	R_factor 0.243 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 114.242 161.743 154.729 90.00 110.34 90.00
method	X-Ray Diffraction	resolution	4.01 Å
Gene Ontology	Chain Function Process Component F, A, J, E, B, H, C, D, I, G
Primary reference	The C-Terminal Arm of the Human Papillomavirus Major Capsid Protein Is Immunogenic and Involved in Virus-Host Interaction., Li Z, Yan X, Yu H, Wang D, Song S, Li Y, He M, Hong Q, Zheng Q, Zhao Q, Gu Y, Zhang J, Janssen ME, Cardone G, Olson NH, Baker TS, Li S, Xia N, Structure. 2016 Jun 7;24(6):874-85. doi: 10.1016/j.str.2016.04.008. PMID:27276427

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1422 Kb) [Save to disk] Biological Unit Coordinates (5j6r.pdb1.gz) 708 Kb Biological Unit Coordinates (5j6r.pdb2.gz) 713 Kb CSU: Contacts of Structural Units for 5J6R Structure Factors (541 Kb) Retrieve 5J6R in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5J6R from S2C, [Save to disk] Re-refined 5j6r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5J6R

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5j6r_H] [5j6r_F] [5j6r_I] [5j6r] [5j6r_C] [5j6r_J] [5j6r_D] [5j6r_B] [5j6r_E] [5j6r_A] [5j6r_G] SWISS-PROT database: Domain organization of by SWISSPFAM

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