5J7U Viral Protein date Apr 06, 2016
title Faustovirus Major Capsid Protein
authors T.Klose, M.G.Rossmann
compound source
Molecule: Major Capsid Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Organism_scientific: Faustovirus
Organism_taxid: 1477405

Molecule: Unknown
Chain: M, N, O, P, Q, R, S, T, U, V, W, X

Organism_scientific: Faustovirus
Organism_taxid: 1477405
symmetry Space Group: P 1 21 1
R_factor 0.205 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.380 390.830 130.140 90.00 91.66 90.00
method X-Ray Diffractionresolution 2.44 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceStructure of faustovirus, a large dsDNA virus., Klose T, Reteno DG, Benamar S, Hollerbach A, Colson P, La Scola B, Rossmann MG, Proc Natl Acad Sci U S A. 2016 May 16. pii: 201523999. PMID:27185929
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2481 Kb) [Save to disk]
  • Biological Unit Coordinates (5j7u.pdb1.gz) 626 Kb
  • Biological Unit Coordinates (5j7u.pdb2.gz) 627 Kb
  • Biological Unit Coordinates (5j7u.pdb3.gz) 634 Kb
  • Biological Unit Coordinates (5j7u.pdb4.gz) 632 Kb
  • CSU: Contacts of Structural Units for 5J7U
  • Structure Factors (7130 Kb)
  • Retrieve 5J7U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J7U from S2C, [Save to disk]
  • Re-refined 5j7u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5J7U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5J7U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5j7u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j7u_J] [5j7u_V] [5j7u_B] [5j7u_K] [5j7u_R] [5j7u_F] [5j7u_I] [5j7u_U] [5j7u_G] [5j7u_A] [5j7u_H] [5j7u_T] [5j7u_X] [5j7u_Q] [5j7u_W] [5j7u_C] [5j7u_N] [5j7u_P] [5j7u_O] [5j7u] [5j7u_E] [5j7u_M] [5j7u_L] [5j7u_S] [5j7u_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5J7U
  • Community annotation for 5J7U at PDBWiki (http://pdbwiki.org)

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