OCA Atlas for 5J7U

5J7U

Viral Protein

date

Apr 06, 2016

title

Faustovirus Major Capsid Protein

authors

T.Klose, M.G.Rossmann

compound

source

Molecule: Major Capsid Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L

Organism_scientific: Faustovirus
Organism_taxid: 1477405

Molecule: Unknown
Chain: M, N, O, P, Q, R, S, T, U, V, W, X

Organism_scientific: Faustovirus
Organism_taxid: 1477405

symmetry

Space Group: P 1 21 1

R_factor

0.205

R_Free

0.252

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
86.380	390.830	130.140	90.00	91.66	90.00

method

X-Ray Diffraction

resolution

2.44 Å

Gene
Ontology

Chain	Function	Process	Component
F, A, J, K, E, B, H, C, D, I, G, L

Primary reference

Structure of faustovirus, a large dsDNA virus., Klose T, Reteno DG, Benamar S, Hollerbach A, Colson P, La Scola B, Rossmann MG, Proc Natl Acad Sci U S A. 2016 May 16. pii: 201523999. PMID:27185929

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2428 Kb) [Save to disk]

Biological Unit Coordinates (5j7u.pdb1.gz) 612 Kb

Biological Unit Coordinates (5j7u.pdb2.gz) 612 Kb

Biological Unit Coordinates (5j7u.pdb3.gz) 620 Kb

Biological Unit Coordinates (5j7u.pdb4.gz) 617 Kb

CSU: Contacts of Structural Units for 5J7U

Structure Factors (7130 Kb)

Retrieve 5J7U in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5J7U from S2C, [Save to disk]

Re-refined 5j7u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5J7U in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5J7U

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5j7u_J] [5j7u_V] [5j7u_B] [5j7u_K] [5j7u_R] [5j7u_F] [5j7u_I] [5j7u_U] [5j7u_G] [5j7u_A] [5j7u_H] [5j7u_T] [5j7u_X] [5j7u_Q] [5j7u_W] [5j7u_C] [5j7u_N] [5j7u_P] [5j7u_O] [5j7u] [5j7u_E] [5j7u_M] [5j7u_L] [5j7u_S] [5j7u_D]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 5J7U

Community annotation for 5J7U at PDBWiki (http://pdbwiki.org)

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]