5J8E Protein Transport date Apr 07, 2016
title Crystal Structure Of Human Hook3'S Conserved Hook Domain
authors C.M.Schroeder, D.C.Ekiert, R.D.Vale
compound source
Molecule: Protein Hook Homolog 3
Chain: A, B
Fragment: Unp Residues 1-160
Synonym: Hhk3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hook3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 2 21 21
R_factor 0.184 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.920 75.880 111.850 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
Primary referenceAssembly and activation of dynein-dynactin by the cargo adaptor protein Hook3., Schroeder CM, Vale RD, J Cell Biol. 2016 Aug 1;214(3):309-18. doi: 10.1083/jcb.201604002. PMID:27482052
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (5j8e.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (5j8e.pdb2.gz) 54 Kb
  • Biological Unit Coordinates (5j8e.pdb3.gz) 105 Kb
  • CSU: Contacts of Structural Units for 5J8E
  • Structure Factors (296 Kb)
  • Retrieve 5J8E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J8E from S2C, [Save to disk]
  • Re-refined 5j8e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5J8E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5J8E
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5j8e from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j8e_A] [5j8e] [5j8e_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5J8E
  • Community annotation for 5J8E at PDBWiki (http://pdbwiki.org)

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