5J97 Rna Binding Protein date Apr 08, 2016
title Dimerization Domain Of Cytoplasmic Activationproliferation- Protein-2 (Caprin-2)
authors Y.Wu, J.Zhu, X.Huang, Z.Du
compound source
Molecule: Caprin-2
Chain: A, B
Fragment: Unp Residues 199-329
Synonym: C1q Domain-Containing Protein 1,Cytoplasmic Activationproliferation-Associated Protein 2,Gastric Cance Multidrug Resistance-Associated Protein,Protein Eeg-1,Rna G Protein 140;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Caprin2, C1qdc1, Eeg1, Kiaa1873, Rng140
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 41 21 2
R_factor 0.211 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.020 71.020 133.760 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.55 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (5j97.pdb1.gz) 42 Kb
  • CSU: Contacts of Structural Units for 5J97
  • Structure Factors (227 Kb)
  • Retrieve 5J97 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J97 from S2C, [Save to disk]
  • View 5J97 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5J97
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5j97 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j97_B] [5j97_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5J97
  • Community annotation for 5J97 at PDBWiki (http://pdbwiki.org)

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