5J9S Transcription date Apr 11, 2016
title Enl Yeats In Complex With Histone H3 Acetylation At K27
authors Y.Li, H.Li
compound source
Molecule: Protein Enl
Chain: A
Fragment: Unp Residues 1-148
Synonym: Yeats Domain-Containing Protein 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mllt1, Enl, Ltg19, Yeats1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid

Molecule: H3k27ac Peptide From Histone H3.1
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 31 2 1
R_factor 0.185 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.979 104.979 45.128 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand ALY, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceENL links histone acetylation to oncogenic gene expression in acute myeloid leukaemia., Wan L, Wen H, Li Y, Lyu J, Xi Y, Hoshii T, Joseph JK, Wang X, Loh YE, Erb MA, Souza AL, Bradner JE, Shen L, Li W, Li H, Allis CD, Armstrong SA, Shi X, Nature. 2017 Mar 1. doi: 10.1038/nature21687. PMID:28241141
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (5j9s.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 5J9S
  • CSU: Contacts of Structural Units for 5J9S
  • Structure Factors (192 Kb)
  • Retrieve 5J9S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J9S from S2C, [Save to disk]
  • Re-refined 5j9s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5J9S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5J9S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5j9s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j9s] [5j9s_A] [5j9s_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5J9S
  • Community annotation for 5J9S at PDBWiki (http://pdbwiki.org)

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