OCA Atlas for 5J9U

5J9U

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ALY

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, N, G
I, E, A
J, F, B	histone acetyltransferase ac...		NuA3 histone acetyltransfera...

Primary reference

The NuA4 Core Complex Acetylates Nucleosomal Histone H4 through a Double Recognition Mechanism., Xu P, Li C, Chen Z, Jiang S, Fan S, Wang J, Dai J, Zhu P, Chen Z, Mol Cell. 2016 Sep 15;63(6):965-75. doi: 10.1016/j.molcel.2016.07.024. Epub 2016 , Sep 1. PMID:27594449

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (837 Kb) [Save to disk]

Biological Unit Coordinates (5j9u.pdb1.gz) 278 Kb

Biological Unit Coordinates (5j9u.pdb2.gz) 276 Kb

Biological Unit Coordinates (5j9u.pdb3.gz) 274 Kb

LPC: Ligand-Protein Contacts for 5J9U

CSU: Contacts of Structural Units for 5J9U

Structure Factors (1838 Kb)

Retrieve 5J9U in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5J9U from S2C, [Save to disk]

Re-refined 5j9u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5J9U in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5j9u_I] [5j9u_J] [5j9u_K] [5j9u_N] [5j9u] [5j9u_A] [5j9u_B] [5j9u_C] [5j9u_D] [5j9u_E] [5j9u_F] [5j9u_G] [5j9u_H]

SWISS-PROT database:

Domain found in 5J9U: [ING ] by SMART

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]