5JA4 Chaperone date Apr 11, 2016
title Crystal Structure Of Human Tonsl And Mcm2 Hbds Binding To A H3-H4 Tetramer
authors H.Huang, D.Patel
compound source
Molecule: Histone H3.3
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: H3f3a, H3.3a, H3f3, Pp781, H3f3b, H3.3b
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21-Codonplus(De3)-Ril

Molecule: Histone H4
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hist1h4a, H4a, H4fa, Hist1h4b, H4i, H4fi, Hist1h4c, H4fg, Hist1h4d, H4b, H4fb, Hist1h4e, H4j, H4fj, Hist1h4f, H4fc, Hist1h4h, H4h, H4fh, Hist1h4i, H4m, H4fm, Hist1h4j, H4fe, Hist1h4k, H4d, H4fd, Hist1h4l, H4k, H4fk, Hist2h4a, H4f2, H4fn, Hist2h4, Hist2h4b, H4o, H4fo, Hist4h4;
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna Replication Licensing Factor Mcm2
Chain: C
Synonym: Minichromosome Maintenance Protein 2 Homolog,Nucle Bm28;
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mcm2, Bm28, Ccnl1, Cdcl1, Kiaa0030
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Tonsoku-Like Protein
Chain: D
Synonym: Inhibitor Of Kappa B-Related Protein,Ikappabr,Nf-K Inhibitor-Like Protein 2,Nuclear Factor Of Kappa Light Poly Gene Enhancer In B-Cells Inhibitor-Like 2;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tonsl, Ikbr, Nfkbil2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 3 2 1
R_factor 0.201 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.506 139.506 72.896 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.42 Å
ligand GOL, MES enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


Primary referenceH4K20me0 marks post-replicative chromatin and recruits the TONSL-MMS22L DNA repair complex., Saredi G, Huang H, Hammond CM, Alabert C, Bekker-Jensen S, Forne I, Reveron-Gomez N, Foster BM, Mlejnkova L, Bartke T, Cejka P, Mailand N, Imhof A, Patel DJ, Groth A, Nature. 2016 Jun 30;534(7609):714-8. PMID:27338793
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (5ja4.pdb1.gz) 255 Kb
  • LPC: Ligand-Protein Contacts for 5JA4
  • CSU: Contacts of Structural Units for 5JA4
  • Structure Factors (492 Kb)
  • Retrieve 5JA4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JA4 from S2C, [Save to disk]
  • Re-refined 5ja4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JA4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JA4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ja4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ja4] [5ja4_C] [5ja4_A] [5ja4_B] [5ja4_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5JA4: [ANK] [H3] [H4 ] by SMART
  • Other resources with information on 5JA4
  • Community annotation for 5JA4 at PDBWiki (http://pdbwiki.org)

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