5JAJ	Rna Binding Protein	date	Apr 12, 2016
title	Structure Of Chicken Lgp2 Witha 5'P 10-Mer Dsrna And Adp-Alf
authors	S.Cusack, E.Uchikawa
compound		source
Molecule: Lgp2 Chain: A Engineered: Yes Mutation: Yes		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Rosetta 2 Expression_system_plasmid: Petm11sumo
Molecule: Rna (5'-R(Pgpgpupapcpgpupapcpcpc)-3') Chain: X Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Rna (5'-R(Pgpgpupapcpgpupapcpc)-3') Chain: Y Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 21 21 21	R_factor 0.133 R_Free 0.168
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.590 97.050 122.520 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	ADP, ALF, EDO, MG, MGF, ZN	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural Analysis of dsRNA Binding to Anti-viral Pattern Recognition Receptors LGP2 and MDA5., Uchikawa E, Lethier M, Malet H, Brunel J, Gerlier D, Cusack S, Mol Cell. 2016 May 19;62(4):586-602. doi: 10.1016/j.molcel.2016.04.021. PMID:27203181

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (276 Kb) [Save to disk] Biological Unit Coordinates (5jaj.pdb1.gz) 269 Kb LPC: Ligand-Protein Contacts for 5JAJ CSU: Contacts of Structural Units for 5JAJ Structure Factors (2436 Kb) Retrieve 5JAJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JAJ from S2C, [Save to disk] Re-refined 5jaj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JAJ in 3D

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Visual 3D analysis of 5JAJ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jaj_Y] [5jaj] [5jaj_A] [5jaj_X] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5JAJ: [DEXDc] [HELICc ] by SMART

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