5JAR	Hydrolase	date	Apr 12, 2016
title	Exploitation Of A Novel Binding Pocket In Human Lipoprotein- Phospholipase A2 (Lp-Pla2) Discovered Through X- Fragment Screening
authors	P.J.Day
compound		source
Molecule: Platelet-Activating Factor Acetylhydrolase Chain: A Synonym: Paf Acetylhydrolase,1-Alkyl-2-Acetylglycerophospho Esterase,2-Acetyl-1-Alkylglycerophosphocholine Esterase,Gro Phospholipase A2,Gviia-Pla2,Ldl-Associated Phospholipase A2 Pla(2),Paf 2-Acylhydrolase; Ec: 3.1.1.47 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pla2g7, Pafah Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.144 R_Free 0.204
crystal cell	length a length b length c angle alpha angle beta angle gamma 99.767 90.797 51.348 90.00 111.76 90.00
method	X-Ray Diffraction	resolution	2.11 Å
ligand	6HV, CL, DMS	enzyme	Hydrolase E.C.3.1.1.47 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Exploitation of a Novel Binding Pocket in Human Lipoprotein-Associated Phospholipase A2 (Lp-PLA) Discovered through X-ray Fragment Screening., Woolford AJ, Pero JE, Aravapalli S, Berdini V, Coyle JE, Day PJ, Dodson AM, Grondin P, Holding FP, Lee LY, Li P, Manas ES, Marino J Jr, Martin AC, McCleland BW, McMenamin RL, Murray CW, Neipp CE, Page LW, Patel VK, Potvain F, Rich S, Rivero RA, Smith K, Somers DO, Trottet L, Velagaleti R, Williams G, Xie R, J Med Chem. 2016 May 20. PMID:27167608

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk] Biological Unit Coordinates (5jar.pdb1.gz) 137 Kb LPC: Ligand-Protein Contacts for 5JAR CSU: Contacts of Structural Units for 5JAR Structure Factors (521 Kb) Retrieve 5JAR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JAR from S2C, [Save to disk] Re-refined 5jar structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JAR in 3D

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Visual 3D analysis of 5JAR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jar] [5jar_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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