5JB2	Immune System	date	Apr 13, 2016
title	Crystal Structure Of Chicken Lgp2 With 5'Ppp 10-Mer Dsrna An Alf4-Mg2+ At 2.2 A Resolution.
authors	S.Cusack, E.Uchikawa
compound		source
Molecule: Lgp2 Chain: A Engineered: Yes Mutation: Yes		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Rna (5'-R(Gpppgpupapcpgpupapcpcpc)-3') Chain: X Engineered: Yes Mutation: Yes Other_details: Synthetic Rna With 5' Triphosphate		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Rna (5'-R(Gpppgpupapcpgpupapcpc)-3') Chain: Y Engineered: Yes Mutation: Yes Other_details: Synthetic Rna With 5' Triphosphate		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 21 21 21	R_factor 0.188 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.140 96.580 122.860 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	ADP, ALF, GTP, MG, ZN	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural Analysis of dsRNA Binding to Anti-viral Pattern Recognition Receptors LGP2 and MDA5., Uchikawa E, Lethier M, Malet H, Brunel J, Gerlier D, Cusack S, Mol Cell. 2016 May 19;62(4):586-602. doi: 10.1016/j.molcel.2016.04.021. PMID:27203181

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk] Biological Unit Coordinates (5jb2.pdb1.gz) 130 Kb LPC: Ligand-Protein Contacts for 5JB2 CSU: Contacts of Structural Units for 5JB2 Structure Factors (785 Kb) Retrieve 5JB2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JB2 from S2C, [Save to disk] Re-refined 5jb2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JB2 in 3D

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Visual 3D analysis of 5JB2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1l5jb2, region B:161-372 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jb2] [5jb2_Y] [5jb2_A] [5jb2_X] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5JB2: [DEXDc] [HELICc ] by SMART

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