5JCG	Oxidoreductase	date	Apr 15, 2016
title	Structure Of Human Peroxiredoxin 3 As Three Stacked Rings
authors	N.A.Yewdall, J.A.Gerrard, D.C.Goldstone
compound		source
Molecule: Thioredoxin-Dependent Peroxide Reductase, Mitocho Chain: A, B, C, D, E, F, G, H, I Synonym: Antioxidant Protein 1,Aop-1,Hbc189,Peroxiredoxin I III,Peroxiredoxin-3,Protein Mer5 Homolog; Ec: 1.11.1.15 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Prdx3, Aop1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Rosetta(De3) Expression_system_plasmid: Pet151-D-Topo
symmetry	Space Group: I 2 2 2	R_factor 0.183 R_Free 0.229
crystal cell	length a length b length c angle alpha angle beta angle gamma 133.188 168.730 221.550 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand		enzyme	Oxidoreductase E.C.1.11.1.15 BRENDA
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, I, G
Primary reference	Structures of Human Peroxiredoxin 3 Suggest Self-Chaperoning Assembly that Maintains Catalytic State., Yewdall NA, Venugopal H, Desfosses A, Abrishami V, Yosaatmadja Y, Hampton MB, Gerrard JA, Goldstone DC, Mitra AK, Radjainia M, Structure. 2016 May 24. pii: S0969-2126(16)30074-0. doi:, 10.1016/j.str.2016.04.013. PMID:27238969

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (274 Kb) [Save to disk] Biological Unit Coordinates (5jcg.pdb1.gz) 1066 Kb CSU: Contacts of Structural Units for 5JCG Structure Factors (4065 Kb) Retrieve 5JCG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JCG from S2C, [Save to disk] Re-refined 5jcg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JCG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5JCG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jcg_F] [5jcg_D] [5jcg_C] [5jcg_E] [5jcg_B] [5jcg] [5jcg_A] [5jcg_H] [5jcg_G] [5jcg_I] SWISS-PROT database: Domain organization of by SWISSPFAM

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