5JCO Structural Protein date Apr 15, 2016
title Structure And Dynamics Of Single-Isoform Recombinant Neurona Tubulin
authors A.Vemu, J.Atherton, J.O.Spector, A.Szyk, C.A.Moores, A.Roll-Mecak
compound source
Molecule: Tubulin Beta-3 Chain
Chain: K, I, J, C, D, L
Synonym: Tubulin Beta-4 Chain, Tubulin Beta-III
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tubb3, Tubb4
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9

Molecule: Tubulin Alpha-1a Chain
Chain: H, E, F, A, B, G
Synonym: Alpha-Tubulin 3, Tubulin B-Alpha-1, Tubulin Alpha-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tuba1a, Tuba3
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.00 Å
ligand G2P, GTP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, G


J, K, C, D, I, L
  • netrin receptor binding


  • Primary referenceStructure and Dynamics of Single-isoform Recombinant Neuronal Human Tubulin., Vemu A, Atherton J, Spector JO, Szyk A, Moores CA, Roll-Mecak A, J Biol Chem. 2016 Apr 25. pii: jbc.C116.731133. PMID:27129203
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (834 Kb) [Save to disk]
  • Biological Unit Coordinates (5jco.pdb1.gz) 826 Kb
  • LPC: Ligand-Protein Contacts for 5JCO
  • CSU: Contacts of Structural Units for 5JCO
  • Retrieve 5JCO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JCO from S2C, [Save to disk]
  • View 5JCO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JCO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5jco from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jco_K] [5jco_B] [5jco_C] [5jco_H] [5jco_L] [5jco] [5jco_I] [5jco_F] [5jco_G] [5jco_D] [5jco_A] [5jco_J] [5jco_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5JCO: [Tubulin] [Tubulin_C ] by SMART
  • Other resources with information on 5JCO
  • Community annotation for 5JCO at PDBWiki (http://pdbwiki.org)

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