5JD2		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	BYY	enzyme
Gene Ontology	Chain Function Process Component B, C, D, A
Primary reference	Selenium single-wavelength anomalous diffraction de novo phasing using an X-ray-free electron laser., Hunter MS, Yoon CH, DeMirci H, Sierra RG, Dao EH, Ahmadi R, Aksit F, Aquila AL, Ciftci H, Guillet S, Hayes MJ, Lane TJ, Liang M, Lundstrom U, Koglin JE, Mgbam P, Rao Y, Zhang L, Wakatsuki S, Holton JM, Boutet S, Nat Commun. 2016 Nov 4;7:13388. doi: 10.1038/ncomms13388. PMID:27811937

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk] Biological Unit Coordinates (5jd2.pdb1.gz) 153 Kb LPC: Ligand-Protein Contacts for 5JD2 CSU: Contacts of Structural Units for 5JD2 Structure Factors (4262 Kb) Retrieve 5JD2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JD2 from S2C, [Save to disk] Re-refined 5jd2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JD2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jd2] [5jd2_A] [5jd2_B] [5jd2_C] [5jd2_D] SWISS-PROT database:

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---