5JHW Cytokine Signaling Protein date Apr 21, 2016
title Crystal Structure Of The Gdf11:Follistatin 288 Complex
authors R.G.Walker, T.B.Thompson
compound source
Molecule: Growthdifferentiation Factor 11
Chain: A, B
Fragment: Unp Residues 299-407
Synonym: Gdf-11,Bone Morphogenetic Protein 11,Bmp-11
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gdf11, Bmp11
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029

Molecule: Follistatin
Chain: C, D
Fragment: Unp Residues 30-317
Synonym: Fs,Activin-Binding Protein
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fst
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.960 59.080 288.460 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand FLC, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Primary referenceStructural basis for potency differences between GDF8 and GDF11., Walker RG, Czepnik M, Goebel EJ, McCoy JC, Vujic A, Cho M, Oh J, Aykul S, Walton KL, Schang G, Bernard DJ, Hinck AP, Harrison CA, Martinez-Hackert E, Wagers AJ, Lee RT, Thompson TB, BMC Biol. 2017 Mar 3;15(1):19. doi: 10.1186/s12915-017-0350-1. PMID:28257634
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (273 Kb) [Save to disk]
  • Biological Unit Coordinates (5jhw.pdb1.gz) 263 Kb
  • LPC: Ligand-Protein Contacts for 5JHW
  • CSU: Contacts of Structural Units for 5JHW
  • Structure Factors (910 Kb)
  • Retrieve 5JHW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JHW from S2C, [Save to disk]
  • Re-refined 5jhw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JHW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JHW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5jhw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jhw_C] [5jhw_D] [5jhw] [5jhw_A] [5jhw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JHW
  • Community annotation for 5JHW at PDBWiki (http://pdbwiki.org)

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