5JI9
Ran-Binding Protein
date
Apr 22, 2016
title
The Crystal Structure Of Ius-Spry Domain From Ranbpm9
authors
S.K.Hong, K.H.Kim, E.E.Kim
compound
source
Molecule
: Ran-Binding Protein 9
Chain
: A
Fragment
: Ius-Spry Domain, Unp Residues 108-350
Synonym
: Ranbp9,Bpm-L,Bpm90,Ran-Binding Protein M,Ranbpm,Ra
Engineered
: Yes
Organism_scientific
: Homo Sapiens
Organism_common
: Human
Organism_taxid
: 9606
Gene
: Ranbp9, Ranbpm
Expression_system
: Escherichia Coli
Expression_system_taxid
: 562
Expression_system_strain
: Rosetta(De3)
Expression_system_vector_type
: Plasmid
Expression_system_plasmid
: Modified Pet28a
symmetry
Space Group
: P 65
R_factor
0.167
R_Free
0.227
crystal
cell
length a
length b
length c
angle alpha
angle beta
angle gamma
69.478
69.478
107.688
90.00
90.00
120.00
method
X-Ray Diffraction
resolution
2.50 Å
Data retrieval
Asymmetric unit, PDB entry:
[header only]
[complete with coordinates]
(37 Kb)
[Save to disk]
Biological Unit Coordinates
(5ji9.pdb1.gz) 33 Kb
CSU:
Contacts of Structural Units
for 5JI9
Structure Factors
(141 Kb)
Retrieve 5JI9 in
mmCIF
format
[Save to disk]
SEQRES to COORDINATES
correlation for
5JI9
from
S2C
,
[Save to disk]
Re-refined
5ji9
structure from
PDB_REDO
, a databank with updated and optimised macromolecular X-ray diffraction structure models
View 5JI9 in 3D
Proteopedia
, because life has more than 2D.
On
Jmol
, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
On
FirstGlance
, an excellent tool for a guided tour on the structure components, by
E. Martz
.
Visual 3D analysis of 5JI9
Ramachandran
plot from
PDBSum
Structure-derived information
Electron Density
related parameters from
EDS
Electron Density Server, at Upsala
Dipole
moment, from
Dipole Server
at Weizmann Institute
Sequence-derived information
View one-letter amino acid or nucleotide sequence for each chain:
[5ji9_A]
[5ji9]
SWISS-PROT
database:
Domain
organization of by
SWISSPFAM
Domain
found in 5JI9:
[SPRY ]
by
SMART
Other resources with information on 5JI9
Community annotation for
5JI9
at
PDBWiki
(http://pdbwiki.org)
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