5JJ2 Hydrolase date Apr 22, 2016
title Crystal Structure Of The Central Domain Of Human Akap18 Gamm Complex With Malonate
authors K.Bjerregaard-Andersen, E.Ostensen, J.D.Scott, K.Tasken, J.P.Mor
compound source
Molecule: A-Kinase Anchor Protein 7 Isoform Gamma
Chain: A
Fragment: Unp Residues 76-286
Synonym: Akap-7 Isoform Gamma,A-Kinase Anchor Protein 18 Kd Protein Kinase A-Anchoring Protein 7 Isoform Gamma,Prka7 Is Gamma;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Akap7, Akap18
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Codonplus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-46 Eklic
symmetry Space Group: P 21 21 21
R_factor 0.161 R_Free 0.180
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.250 60.260 65.540 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.25 Å
ligand MLI enzyme
Primary referenceMalonate in the nucleotide-binding site traps human AKAP18gamma/delta in a novel conformational state., Bjerregaard-Andersen K, Ostensen E, Scott JD, Tasken K, Morth JP, Acta Crystallogr F Struct Biol Commun. 2016 Aug;72(Pt 8):591-7. doi:, 10.1107/S2053230X16010189. Epub 2016 Jul 13. PMID:27487922
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (5jj2.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 5JJ2
  • CSU: Contacts of Structural Units for 5JJ2
  • Structure Factors (1427 Kb)
  • Retrieve 5JJ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JJ2 from S2C, [Save to disk]
  • Re-refined 5jj2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JJ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JJ2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jj2] [5jj2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JJ2
  • Community annotation for 5JJ2 at PDBWiki (http://pdbwiki.org)

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