5JJ4	Hydrolase	date	Apr 22, 2016
title	Crystal Structure Of A Variant Human Activation-Induced Deox Deaminase As An Mbp Fusion Protein
authors	L.C.Pedersen, M.F.Goodman, P.Pham, S.A.Afif
compound		source
Molecule: Maltose-Binding Periplasmic Protein,Single-Strand Cytosine Deaminase; Chain: C, A, B Fragment: Unp Residues 27-384, Unp Residues 3-183 Synonym: Mbp,Mmbp,Maltodextrin-Binding Protein,Activation-I Cytidine Deaminase,Cytidine Aminohydrolase; Ec: 3.5.4.38 Engineered: Yes		Organism_scientific: Escherichia Coli O157:H7, Homo Sapiens Organism_common: Human Organism_taxid: 83334, 9606 Gene: Male, Z5632, Ecs5017, Aicda, Aid Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Csh50 Expression_system_plasmid: Pmalx
symmetry	Space Group: P 1 21 1	R_factor 0.183 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 106.793 96.806 108.692 90.00 102.86 90.00
method	X-Ray Diffraction	resolution	2.81 Å
ligand	CA, GLC, ZN	enzyme	Hydrolase E.C.3.5.4.38 BRENDA
Gene Ontology	Chain Function Process Component A, C, B carbohydrate transmembrane t...
Primary reference	Structural analysis of the activation-induced deoxycytidine deaminase required in immunoglobulin diversification., Pham P, Afif SA, Shimoda M, Maeda K, Sakaguchi N, Pedersen LC, Goodman MF, DNA Repair (Amst). 2016 Jul;43:48-56. doi: 10.1016/j.dnarep.2016.05.029. Epub, 2016 May 13. PMID:27258794

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (540 Kb) [Save to disk] Biological Unit Coordinates (5jj4.pdb1.gz) 179 Kb Biological Unit Coordinates (5jj4.pdb2.gz) 180 Kb Biological Unit Coordinates (5jj4.pdb3.gz) 179 Kb LPC: Ligand-Protein Contacts for 5JJ4 CSU: Contacts of Structural Units for 5JJ4 Structure Factors (396 Kb) Retrieve 5JJ4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JJ4 from S2C, [Save to disk] Re-refined 5jj4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JJ4 in 3D

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Visual 3D analysis of 5JJ4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jj4] [5jj4_B] [5jj4_A] [5jj4_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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